59 integer,
parameter :: RESTART_N_DATA_TYPES = 15
61 integer,
parameter,
public :: &
62 RESTART_UNDEFINED = -1, &
82 character(len=20) :: tag
83 character(len=MAX_PATH_LEN) :: basedir
84 character(len=MAX_PATH_LEN) :: dir
89 integer,
parameter,
public :: &
90 RESTART_TYPE_DUMP = 1, &
94 integer,
parameter,
public :: &
95 RESTART_FLAG_STATES = 1, &
106 character(len=20) :: tag
107 character(len=MAX_PATH_LEN) :: dir
109 integer :: default_flags = 0
112 character(len=4),
parameter :: type_string(2) = (/
"DUMP",
"LOAD"/)
124 type(namespace_t),
pointer,
public :: namespace
125 integer :: data_type = restart_undefined
126 integer ::
type = restart_undefined
128 character(len=MAX_PATH_LEN) :: dir_
129 character(len=MAX_PATH_LEN) :: pwd
132 character(len=MAX_PATH_LEN),
public :: basedir
134 type(mpi_grp_t) ,
public :: mpi_grp
135 logical :: initialized = .false.
136 logical,
public :: grid_changed = .false.
140 procedure,
private :: restart_basic_init
141 generic :: init => restart_basic_init
164 integer(int64),
allocatable :: map(:)
166 integer,
public :: file_format_states
175 procedure,
private :: drestart_write_mesh_function, zrestart_write_mesh_function
176 generic :: write_mesh_function => drestart_write_mesh_function, zrestart_write_mesh_function
227 subroutine block_signals()
229 end subroutine block_signals
234 subroutine unblock_signals()
236 end subroutine unblock_signals
246 logical :: file_exists
252 if (mpi_grp%is_root())
then
253 inquire(file=
'stop', exist=file_exists)
254 if (file_exists)
then
275 integer,
intent(in) :: data_type
276 integer,
intent(in) ::
type
278 integer,
intent(out) :: ierr
279 character(len=*),
optional,
intent(in) :: dir
282 character(len=MAX_PATH_LEN) :: basedir, dirname
283 integer :: iline, n_cols, idata_type, i
284 character(len=MAX_PATH_LEN) :: default_basedir
285 character(len=20) :: tag
287 logical :: restart_write, dir_exists
288 character(len=MAX_NAMESPACE_LEN) :: namespace_prefix
296 namespace_prefix = trim(namespace%get())
299 restart%basedir = default_basedir
300 restart%skip_ = .false.
301 restart%data_type = data_type
302 if(data_type>0 .and. data_type<=restart_n_data_types)
then
303 restart%flags =
basic_info(data_type)%default_flags
308 if (data_type < restart_undefined .and. data_type > restart_n_data_types)
then
309 message(1) =
"Illegal data_type in restart_init"
312 restart%namespace => namespace
459 if (
parse_block(namespace,
'RestartOptions', blk) == 0)
then
466 if (idata_type < 0 .or. idata_type > restart_n_data_types)
then
467 call messages_input_error(namespace,
'RestartOptions',
"Invalid data type", row=iline-1, column=0)
469 if (data_type == 0)
then
473 if (idata_type == data_type .or. idata_type == 0)
then
478 namespace_prefix = namespace_prefix(1:len_trim(namespace_prefix)-len_trim(
'.RestartOptions'))
480 if (len_trim(namespace_prefix) == 0 .or. trim(namespace%get()) == trim(namespace_prefix))
then
481 namespace_prefix = trim(namespace%get())
488 namespace_prefix =
""
499 basedir = restart%basedir
502 do i=1, len(namespace_prefix)
503 if (namespace_prefix(i:i) ==
'.') namespace_prefix(i:i) =
'/'
507 basedir = trim(basedir)//trim(namespace_prefix)
509 dirname = trim(
basic_info(restart%data_type)%dir)
513 select case (restart%type)
514 case (restart_type_dump)
526 restart%skip_ = .not. restart_write
528 if (restart%skip_)
then
529 message(1) =
'Restart information will not be written.'
535 restart%skip_ = .false.
538 message(1) =
"Unknown restart type in restart_init"
544 if (restart%data_type == restart_undefined)
then
551 restart%dir_ = trim(basedir)//trim(dirname)
553 if (index(restart%dir_,
'/', .
true.) == len_trim(restart%dir_))
then
554 restart%dir_ = restart%dir_(1:len_trim(restart%dir_)-1)
558 restart%pwd = restart%dir_
561 if (restart%mpi_grp%is_root())
then
563 if (restart%type == restart_type_dump .and. .not. dir_exists)
then
571 if (restart%mpi_grp%size > 1)
then
572 call restart%mpi_grp%bcast(dir_exists, 1, mpi_logical, 0)
575 if (restart%data_type == restart_undefined)
then
581 select case (restart%type)
582 case (restart_type_dump)
583 if (.not. restart%skip_)
then
584 message(1) =
"Info: "//trim(tag)//
" restart information will be written to '"//trim(restart%pwd)//
"'."
589 if (.not. dir_exists)
then
591 restart%skip_ = .
true.
593 message(1) =
"Info: Could not find '"//trim(restart%pwd)//
"' directory for restart."
594 message(2) =
"Info: No restart information will be read."
597 message(1) =
"Info: "//trim(tag)//
" restart information will be read from '"//trim(restart%pwd)//
"'."
603 restart%initialized = .
true.
612 res = restart%mpi_grp%is_root()
622 subroutine restart_init(restart, namespace, data_type, type, mc, ierr, mesh, dir, exact)
625 integer,
intent(in) :: data_type
626 integer,
intent(in) ::
type
629 integer,
intent(out) :: ierr
630 class(
mesh_t),
optional,
intent(in) :: mesh
632 character(len=*),
optional,
intent(in) :: dir
634 logical,
optional,
intent(in) :: exact
637 logical :: grid_changed, grid_reordered, exact_, with_changed_grid
638 integer :: default_format
648 restart%has_mesh =
present(mesh)
653 if (
present(exact) .and. .not.
present(mesh))
then
654 message(1) =
"Error in restart_init: the 'exact' optional argument requires a mesh."
660 restart%has_mesh =
present(mesh)
663 if(
present(mesh))
then
684 default_format = option__restartfileformatstates__adios2
686 default_format = option__restartfileformatstates__obf
688 call parse_variable(namespace,
'RestartFileFormatStates', default_format, restart%file_format_states)
693 if (restart%file_format_states == option__restartfileformatstates__adios2)
then
697 message(1) =
"Error: adios2 restart file format requested, but not compiled against ADIOS2 library."
709 call parse_variable(namespace,
'RestartWithChangedGrid', .false., with_changed_grid)
711 select case (restart%type)
712 case (restart_type_dump)
713 if (.not. restart%skip_)
then
719 call index_dump(mesh%idx, mesh%np_part_global, restart%pwd, restart%mpi_grp, &
722 message(1) =
"Unable to write index map to '"//trim(restart%pwd)//
"'."
728 message(1) =
"Unable to write mesh fingerprint to '"//trim(restart%pwd)//
"/grid'."
734 if(.not. restart%skip_)
then
736 restart%mpi_grp, grid_changed, grid_reordered, restart%map, ierr)
741 message(1) =
"Unable to check mesh compatibility: unable to read mesh fingerprint"
742 message(2) =
"in '"//trim(restart%pwd)//
"'."
743 else if (ierr > 1)
then
744 message(1) =
"Mesh from current calculation is not compatible with mesh found in"
745 message(2) =
"'"//trim(restart%pwd)//
"'."
747 message(3) =
"No restart information will be read."
752 restart%grid_changed = grid_changed
755 if (grid_changed)
then
756 if (grid_reordered)
then
757 message(1) =
"Info: Octopus is attempting to restart from a mesh with a different order of points."
759 message(1) =
"Info: Octopus is attempting to restart from a different mesh."
761 if (with_changed_grid)
then
764 message(2) =
"This is disabled. To enable this, set RestartWithChangedGrid=True."
771 restart%skip_ = grid_changed .and. .not. grid_reordered
772 if (restart%skip_)
then
773 message(1) =
"This calculation requires the exact same mesh to restart."
774 message(2) =
"No restart information will be read from '"//trim(restart%pwd)//
"'."
779 restart%skip_ = .false.
787 if (restart%mpi_grp%size > 1)
then
788 call restart%mpi_grp%barrier()
803 restart%data_type = 0
804 restart%skip_ = .
true.
812 class(
restart_t),
intent(inout) :: restart
816 if (restart%mpi_grp%is_root() .and. .not. restart%skip_)
then
817 select case (restart%type)
819 message(1) =
"Info: Finished reading information "//trim(
basic_info(restart%type)%tag)//
" from '"//trim(restart%dir_)//
"'."
820 call io_rm(trim(restart%pwd)//
"/loading")
821 case (restart_type_dump)
822 call io_rm(trim(restart%pwd)//
"/dumping")
823 message(1) =
"Info: Finished writing information "//trim(
basic_info(restart%type)%tag)//
" to '"//trim(restart%dir_)//
"'."
828 safe_deallocate_a(restart%map)
829 restart%has_mesh = .false.
847 character(len=MAX_PATH_LEN) :: restart_basic_dir
849 push_sub(restart_basic_dir)
853 pop_sub(restart_basic_dir)
862 character(len=*),
intent(in) :: dirname
863 integer,
intent(out) :: ierr
867 assert(.not. restart%skip_)
871 select case (restart%type)
872 case (restart_type_dump)
875 if (.not.
loct_dir_exists(trim(restart%dir_)//
"/"//trim(dirname)))
then
881 if (index(dirname,
'/', .
true.) == len_trim(dirname))
then
882 restart%pwd = trim(restart%dir_)//
"/"//dirname(1:len_trim(dirname)-1)
884 restart%pwd = trim(restart%dir_)//
"/"//trim(dirname)
899 assert(.not. restart%skip_)
901 restart%pwd = restart%dir_
911 character(len=*),
intent(in) :: dirname
915 assert(.not. restart%skip_)
917 assert(restart%type == restart_type_dump)
919 call io_mkdir(trim(restart%pwd)//
"/"//trim(dirname), parents=.
true.)
929 character(len=*),
intent(in) :: name
931 assert(.not. restart%skip_)
932 assert(restart%type == restart_type_dump)
936 call io_rm(trim(restart%pwd)//
"/"//trim(name))
951 character(len=*),
intent(in) :: filename
952 character(len=*),
optional,
intent(in) :: status
953 character(len=*),
optional,
intent(in) :: position
954 logical,
optional,
intent(in) :: silent
955 integer :: restart_basic_open
958 character(len=20) :: action, status_
960 push_sub(restart_basic_open)
962 assert(restart%initialized)
963 assert(.not. restart%skip_)
965 select case (restart%type)
966 case (restart_type_dump)
977 message(1) =
"Error in restart_basic_open: illegal restart type"
981 if (
present(status)) status_ = status
983 restart_basic_open =
io_open(trim(restart%pwd)//
"/"//trim(filename), &
984 action=trim(action), status=trim(status_), &
985 die=die, position=position, form=
"formatted", grp=restart%mpi_grp)
987 if (restart_basic_open == -1 .and. .not.
optional_default(silent, .false.))
then
988 message(1) =
"Unable to open file '"//trim(restart%pwd)//
"/"//trim(filename)//
"'."
992 pop_sub(restart_basic_open)
999 integer,
intent(in) :: iunit
1000 character(len=*),
intent(in) :: lines(:)
1001 integer,
intent(in) :: nlines
1002 integer,
intent(out) :: ierr
1008 if (iunit /= -1)
then
1010 if (restart%mpi_grp%is_root())
then
1011 do iline = 1, nlines
1012 write(iunit,
"(a)") trim(lines(iline))
1026 integer,
intent(in) :: iunit
1027 character(len=*),
intent(out) :: lines(:)
1028 integer,
intent(in) :: nlines
1029 integer,
intent(out) :: ierr
1033 call iopar_read(restart%mpi_grp, iunit, lines, nlines, ierr)
1043 integer,
intent(inout) :: iunit
1047 if (iunit /= -1)
call io_close(iunit, restart%mpi_grp)
1049 call restart%mpi_grp%barrier()
1072 integer,
intent(in) :: flag
1099 character(:),
allocatable :: info
1108 character(:),
allocatable :: info
1116#include "restart_inc.F90"
1119#include "complex.F90"
1120#include "restart_inc.F90"
block signals while writing the restart files
unblock signals when writing restart is finished
This module implements batches of mesh functions.
This module handles the calculation mode.
character(len= *), parameter, public em_resp_fd_dir
character(len= *), parameter, public gs_dir
character(len= *), parameter, public iteration_dir
character(len= *), parameter, public casida_dir
character(len= *), parameter, public vib_modes_dir
character(len= *), parameter, public partition_dir
character(len= *), parameter, public kdotp_dir
character(len= *), parameter, public dm_dir
character(len= *), parameter, public em_resp_dir
character(len= *), parameter, public td_dir
character(len= *), parameter, public vdw_dir
character(len= *), parameter, public oct_dir
This module implements the index, used for the mesh points.
subroutine, public index_dump(idx, np, dir, mpi_grp, namespace, ierr)
subroutine, public io_close(iunit, grp)
subroutine, public iopar_read(grp, iunit, lines, n_lines, ierr)
character(len=max_path_len) function, public io_workpath(path, namespace)
construct path name from given name and namespace
subroutine, public io_rm(fname, namespace)
character(len=max_path_len) function, public io_workdir()
construct working directory
subroutine, public io_mkdir(fname, namespace, parents)
logical function, public io_dir_exists(dir, namespace)
Returns true if a dir with name 'dir' exists.
integer function, public io_open(file, namespace, action, status, form, position, die, recl, grp)
System information (time, memory, sysname)
subroutine, public loct_rm(name)
logical function, public loct_dir_exists(dirname)
This module defines functions over batches of mesh functions.
This module defines the meshes, which are used in Octopus.
subroutine, public mesh_check_dump_compatibility(mesh, dir, filename, namespace, mpi_grp, grid_changed, grid_reordered, map, ierr)
subroutine, public mesh_write_fingerprint(mesh, dir, filename, mpi_grp, namespace, ierr)
subroutine, public messages_warning(no_lines, all_nodes, namespace)
subroutine, public messages_obsolete_variable(namespace, name, rep)
character(len=256), dimension(max_lines), public message
to be output by fatal, warning
subroutine, public messages_fatal(no_lines, only_root_writes, namespace)
subroutine, public messages_input_error(namespace, var, details, row, column)
subroutine, public messages_info(no_lines, iunit, debug_only, stress, all_nodes, namespace)
type(mpi_comm), parameter, public mpi_comm_undefined
used to indicate a communicator has not been initialized
subroutine mpi_grp_init(grp, comm)
Initialize MPI group instance.
This module handles the communicators for the various parallelization strategies.
type(namespace_t), public global_namespace
Some general things and nomenclature:
character(len=:) function, allocatable, public parse_get_full_name(namespace, varname)
Given a namespace and a variable name, this function will iterate over all namespace ancestors contai...
subroutine, public parse_block_string(blk, l, c, res, convert_to_c)
integer function, public parse_block(namespace, name, blk, check_varinfo_)
subroutine zrestart_write_binary3_int32(restart, filename, np, ff, ierr, root)
subroutine drestart_write_binary1_int32(restart, filename, np, ff, ierr, root)
subroutine drestart_read_binary3(restart, filename, np, ff, ierr)
logical pure function restart_has_map(restart)
Returns true if the restart was from a different order of mesh points.
integer, parameter, public restart_partition
integer, parameter, public restart_custom
subroutine drestart_write_binary5(restart, filename, np, ff, ierr, root)
subroutine restart_basic_end(restart)
subroutine restart_basic_open_dir(restart, dirname, ierr)
Change the restart directory to dirname, where "dirname" is a subdirectory of the base restart direct...
integer, parameter, public restart_dm
subroutine restart_basic_mkdir(restart, dirname)
Make directory "dirname" inside the current restart directory.
integer, parameter, public restart_all
subroutine restart_basic_close(restart, iunit)
Close a file previously opened with restart_basic_open.
subroutine drestart_read_binary1(restart, filename, np, ff, ierr)
subroutine restart_basic_close_dir(restart)
Change back to the base directory. To be called after restart_basic_open_dir.
subroutine zrestart_write_binary1(restart, filename, np, ff, ierr, root)
integer, parameter, public restart_casida
subroutine zrestart_write_binary5_int32(restart, filename, np, ff, ierr, root)
subroutine zrestart_read_binary5_int32(restart, filename, np, ff, ierr)
integer, parameter, public restart_kdotp
subroutine zrestart_read_binary3(restart, filename, np, ff, ierr)
integer, parameter, public restart_oct
subroutine drestart_read_binary3_int32(restart, filename, np, ff, ierr)
type(restart_basic_data_t), dimension(restart_undefined:restart_n_data_types), parameter basic_info
Information about the components for a given system.
subroutine zrestart_read_binary3_int32(restart, filename, np, ff, ierr)
subroutine drestart_read_binary2(restart, filename, np, ff, ierr)
integer, parameter, public restart_gs
subroutine zrestart_read_binary1_int32(restart, filename, np, ff, ierr)
integer, parameter, public restart_iteration
subroutine drestart_write_binary3(restart, filename, np, ff, ierr, root)
integer, parameter, public restart_flag_mix
subroutine drestart_write_binary3_int32(restart, filename, np, ff, ierr, root)
subroutine zrestart_write_binary1_int32(restart, filename, np, ff, ierr, root)
subroutine restart_init(restart, namespace, data_type, type, mc, ierr, mesh, dir, exact)
Initializes a specific restart object.
integer function restart_basic_open(restart, filename, status, position, silent)
Open file "filename" found inside the current restart directory. Depending on the type of restart,...
integer, parameter, public restart_flag_skip
integer, parameter, public restart_em_resp_fd
subroutine drestart_read_binary2_int32(restart, filename, np, ff, ierr)
subroutine drestart_write_binary5_int32(restart, filename, np, ff, ierr, root)
subroutine restart_basic_rm(restart, name)
Remove directory or file "name" that is located inside the current restart directory.
subroutine restart_end(restart)
integer, parameter, public restart_proj
subroutine zrestart_read_binary1(restart, filename, np, ff, ierr)
integer, parameter, public restart_flag_rho
integer, parameter, public restart_em_resp
integer, parameter, public restart_vib_modes
logical function, public clean_stop(mpi_grp)
returns true if a file named stop exists
subroutine drestart_write_binary1(restart, filename, np, ff, ierr, root)
subroutine drestart_read_binary1_int32(restart, filename, np, ff, ierr)
subroutine zrestart_write_binary5(restart, filename, np, ff, ierr, root)
subroutine zrestart_read_mesh_function(restart, filename, mesh, ff, ierr)
In domain parallel case each process reads a part of the file. At the end all the processes have the ...
integer, parameter, public restart_flag_vhxc
logical pure function restart_basic_has_flag(restart, flag)
Returns true if...
subroutine restart_basic_write(restart, iunit, lines, nlines, ierr)
integer, parameter, public restart_flag_literal
subroutine drestart_read_binary5_int32(restart, filename, np, ff, ierr)
subroutine drestart_write_binary2(restart, filename, np, ff, ierr, root)
subroutine drestart_read_binary5(restart, filename, np, ff, ierr)
character(len=max_path_len) function restart_basic_dir(restart)
Returns the name of the directory containing the restart information. The use of this function should...
subroutine zrestart_write_binary2_int32(restart, filename, np, ff, ierr, root)
character(len=4), dimension(2), parameter type_string
logical pure function restart_basic_skip(restart)
Returns true if the restart information should neither be read nor written. This might happen because...
integer, parameter, public restart_td
subroutine drestart_read_mesh_function(restart, filename, mesh, ff, ierr)
In domain parallel case each process reads a part of the file. At the end all the processes have the ...
integer, parameter, public restart_type_load
character(:) function, allocatable restart_basic_get_info(restart)
subroutine restart_basic_read(restart, iunit, lines, nlines, ierr)
subroutine zrestart_read_binary2(restart, filename, np, ff, ierr)
integer pure function restart_basic_get_data_type(restart)
Returns the data type of the restart.
integer, parameter, public restart_vdw
subroutine zrestart_read_binary5(restart, filename, np, ff, ierr)
subroutine zrestart_write_binary2(restart, filename, np, ff, ierr, root)
integer, parameter, public restart_unocc
subroutine zrestart_write_binary3(restart, filename, np, ff, ierr, root)
subroutine zrestart_read_binary2_int32(restart, filename, np, ff, ierr)
logical function restart_basic_do_i_write(restart)
character(:) function, allocatable restart_get_info(restart)
subroutine restart_basic_init(restart, namespace, data_type, type, ierr, dir)
subroutine drestart_write_binary2_int32(restart, filename, np, ff, ierr, root)
subroutine, public add_last_slash(str)
Adds a '/' in the end of the string, only if it missing. Useful for directories.
This module defines the unit system, used for input and output.
Describes mesh distribution to nodes.
This is defined even when running serial.
Stores all communicators and groups.
restart_basic_data_t stores global information about a specific component we want to save....
restart_basic_t stores the basic information about a restart object.